Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015917034.1_cds_XP_016466674.1_59505
CDS Infomation

[gene=LOC107789394] [db_xref=GeneID:107789394] [protein=probable polygalacturonase At1g80170] [protein_id=XP_016466674.1] [location=join(2013..2249,2856..2984,3510..3680,3959..3979,4070..4277,4616..4697,4938..5046,5259..5375,5621..5902)] [gbkey=CDS]
Sequence

ATGGCTAAGACAAAGATACTCTTCATTTTATTTCTTGTTTTGTTAGTTGAGTCTCTTGGA
AATGCACTTGAGAAGAATCTTGAAGAAGAAATTTTTTCAGAGTTTGAAGATTTTGATGAC
ATTAATGAAGATGAAGAAGAAGTATTTGAACTACAGAAAAATGGAAGGGGGAATAAAGTT
CTTGTCAATGTTGATAGTTTTGGTGCAGTTGGTGATGGAACTTCTGATGACACCAAGGCA
TTTGTAGATGCATGGAACCAAGCTTGTTCGAAACGAAGATCAGTCTTCTTGGTCCCTTCA
GGACGCACTTATCTAGTGAATGCAACCAGATTCAACGGGCCTTGTGCCAACAGATTAATC
ATCCAGGTCGATGGAACCATAATGGCACCAAGCGATCCTGAGGACTGGGATCCAAAGAGT
CCAAAAGCTTGGCTTGTGTTCAACAATTTGACAGGAACTACATTCCAAGGGCATGGAGTA
ATTGATGGATCAGGCAGCAAATGGTGGGCAGCATCATGCAAGAAGAACAAGACCAATCCT
TGTAAAGCAGCACCAAGGGCATTAACTATAGACTCAAGCTCAGGAATAAGGGTGAAGGGC
CTTACATTCCAAAATAGCCAACAGATGCATTTTGTCATTTCTCGATCGGATTCTGTACGT
GTAAATGGCATTATGATTTCTTCTCCTGGAGATAGTCCTAATACCGATGGAATCCATATA
AGTGAATCAACAAATGTTGTACTCCAGGACTGCAAAATCGGGACAGGCGATGACTGCATA
TCAATCGTCAATGCTAGTTCCAATATCAGGATGAAGACAATCCACTGTGGTCCTGGCCAT
GGAATCAGCATTGGGAGCCTTGGTAAGGACGACTCTGTCGGCATAGTGACAAGGGTAGTA
CTGGATACTGCATTCCTCAAAGGTACCACAAACGGCCTCAGGATCAAGACATGGCAGGGA
GGATCAGGTTATGTTCGCACAGTGCGCTTCCAAAATGTAAGGATGGAAGATGTTTCAAAT
CCAATCATCATCGATCAATTCTATTGCGACTCACAAAAACCTTGCCATAATCAGACATCT
GCAGTTGAGATAAGTGAAGTAATGTATCGCAACGTTAGTGGAACGTCAAAAAGCCAAAAG
GCGATGAAATTCGCGTGTAGTGACACCGTCCCCTGCAGCCACATTACCCTGGACAATGTC
AACTTAGAGGGTAGAGATGGCACAGCTGAAGTATACTGCAACTCTGCAACAGGCATTATA
GCCGGTTATGTTCATCCAGAAGCAGAGTGTCTCAACTCATCTGATAAGAAAATTGAGCAG
AAAATTGAAGAATACAATGTTCACACTGAGCTATGA

Peptide Sequence

PEP ID

XP_016466674.1
PEP Infomation

PREDICTED: probable polygalacturonase At1g80170 [Nicotiana tabacum]
Sequence

MAKTKILFILFLVLLVESLGNALEKNLEEEIFSEFEDFDDINEDEEEVFELQKNGRGNKV
LVNVDSFGAVGDGTSDDTKAFVDAWNQACSKRRSVFLVPSGRTYLVNATRFNGPCANRLI
IQVDGTIMAPSDPEDWDPKSPKAWLVFNNLTGTTFQGHGVIDGSGSKWWAASCKKNKTNP
CKAAPRALTIDSSSGIRVKGLTFQNSQQMHFVISRSDSVRVNGIMISSPGDSPNTDGIHI
SESTNVVLQDCKIGTGDDCISIVNASSNIRMKTIHCGPGHGISIGSLGKDDSVGIVTRVV
LDTAFLKGTTNGLRIKTWQGGSGYVRTVRFQNVRMEDVSNPIIIDQFYCDSQKPCHNQTS
AVEISEVMYRNVSGTSKSQKAMKFACSDTVPCSHITLDNVNLEGRDGTAEVYCNSATGII
AGYVHPEAECLNSSDKKIEQKIEEYNVHTEL

Transcript Sequence

Gene sequence data has not been registered.